Package: bbmix
Title: Bayesian Model for Genotyping using RNA-Seq
Version: 1.0.0
Authors@R: c(
    person("Elena", "Vigorito", email = "elena.vigorito@mrc-bsu.cam.ac.uk",  role = c("aut", "cre")),
    person("Chris", "Wallace", email="cew54@cam.ac.uk", role="aut"))
Description: The method models RNA-seq reads using a mixture of 3
        beta-binomial distributions to generate posterior probabilities
        for genotyping bi-allelic single nucleotide polymorphisms.
        Elena Vigorito, Anne Barton, Costantino Pitzalis, Myles J.
        Lewis and Chris Wallace (2023)
        <doi:10.1093/bioinformatics/btad393> "BBmix: a Bayesian
        beta-binomial mixture model for accurate genotyping from
        RNA-sequencing."
License: GPL-2
Encoding: UTF-8
Biarch: true
Depends: R (>= 3.4.0)
Imports: methods, Rcpp (>= 0.12.0), rstan (>= 2.18.1), R.utils,
        data.table, rmutil
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        rstan (>= 2.18.1), rstantools, StanHeaders (>= 2.18.0)
SystemRequirements: GNU make
RoxygenNote: 7.1.0
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2026-07-04 06:08:10 UTC; root
Author: Elena Vigorito [aut, cre], Chris Wallace [aut]
Maintainer: Elena Vigorito <elena.vigorito@mrc-bsu.cam.ac.uk>
Config/pak/sysreqs: make
Repository: https://evigorito.r-universe.dev
Date/Publication: 2023-07-06 13:00:09 UTC
RemoteUrl: https://github.com/cran/bbmix
RemoteRef: HEAD
RemoteSha: ef559b819bb265c617d876930153cdaec644d189